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  • What is the difference between agarose gel and polyacrylamide gel electrophoresis?
  • In polyacrylamide gel electrophoresis, polyacrylamide gel separates macromolecules, i.e., proteins of size five kDa to 250 kDa. Similarly, it can also isolate DNA of 5- 500 bp size. In agarose gel electrophoresis, agarose gel separates DNA, RNA, and protein. It can isolate DNA about 50-20,000 bp in size.
  • What is polyacrylamide gel electrophoresis?
  • The most commonly used polyacrylamide gel electrophoresis for quantitative protein analysis is Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The polyacrylamide gel forms by polymerizing acrylamide and a crosslinking agent, i.e., N, N’-methylene-bis-acrylamide.
  • How does a polyacrylamide gel separate analytes?
  • The basic principle of PAGE is to separate analytes by passing them through the pores of a polyacrylamide gel using an electric current. To achieve this, an acrylamide– bisacrylamide mix is polymerized (polyacrylamide) by the addition of ammonium persulfate (APS).
  • Why is polyacrylamide better than agarose?
  • The pores formed in polyacrylamide are smaller than those of agarose, used for agarose gel electrophoresis. This makes it more suitable for the separation of proteins over large polynucleotide DNA or RNA fragments and allows the separation of relatively small proteins.